CEACAM1
CEA cell adhesion molecule 1
Dependent Cell Lines
CRISPR: 0/789
RNAi: 1/712
Gene Effect
Dependent Cell Line:
A cell line is considered dependent if it has a probability of dependency greater than 0.5.
Probability of Dependency:
Probabilities of dependency are calculated for each gene score in a cell line as the probability that score arises from the distribution of essential gene scores rather than nonessential gene scores. See here for details.
Enriched Lineages
CRISPR
Gene Effect (CERES)
RNAi
Gene Effect (DEMETER2)
Enriched lineages have p-values < 0.0005 (shown in parentheses). n= indicates the number of cell lines plotted in that lineage.
Expression & CN
Expression
Copy Number log2(relative to ploidy + 1)
Expression:
RNASeq files are aligned with STAR and quantified with RSEM, then TPM-normalized. Reported values are log2(TPM+1).
Copy Number:
The relative copy number pipeline used varies by cell line. For around 1000 lines, Sanger WES data was used, while for around 700 lines, Broad WES data was used. The remaining lines use SNP array data as explained in 10.1038/s41586-019-1186-3. See 10.1101/720243 for details on how CN source is chosen per line. Lines with WES data were processed through GATK using PONs from TCGA without matched normals and transformed by log2(x+1).
Target Tractability
Description
Expression Public 20Q3
Copy Number (Absolute)
Copy Number Public 20Q3
Mutation Public 20Q3
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Proteomics (P13688)
- Official symbol: CEACAM1
- Full name: CEA cell adhesion molecule 1
- Location:
- Also known as: BGP1, BGP, CD66a
- Entrez ID: 634
- Ensembl ID: ENSG00000079385
Search external sites for CEACAM1
- PubMed ( entries)
- HUGO
- GeneCards
- Wikipedia
- Firebrowse
- Tumor Portal
- GTEx
- COSMIC
- NCBI